Supporting Materials For:

     A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors (by Hongkai Ji, Steven A. Vokes, Wing H. Wong)

 

    1. The Gibbs Motif Sampler Used in the Paper:

             Executables: [Windows] [Mac OS X]

             Source Code: Available upon request (email: ji@fas.harvard.edu)

             Readme

 

    2. The paper that describes Gli ChIP-chip study

             Steven A. Vokes, Hongkai Ji, Scott McCuine, Toyoaki Tenzen, Shane Giles, Sheng Zhong, Wing H. Wong, Andrew P. McMahon. Genomic Characterization of Gli Transcriptional Targets in a Sonic Hedgehog-Mediated Neural Patterning Response.

    3. The Gli Datasets

         GEO accession: GSE5683

         Genomic Regions tiled in the Gli study.