1) Cross-hybridization file
i) Human
Human_CrossHyb.txt
ii) Mouse
Mouse_CrossHyb.txt
Slimmer cross-hybridizaton files, which only contain probes from genes with core probesets.
Using these files will reduce the memory load of MADS program.
i) Human
Human_CrossHyb_core.txt
ii) Mouse
Mouse_CrossHyb_core.txt
2) Array Annotation
i) Human:
a) Transcript Annotation: HuEx-1_0-st-v2.na24.hg18.transcript.csv
b) Probeset Annotation: HuEx-1_0-st-v2.na24.hg18.probeset.csv
c) Probe Group File: HuEx-1_0-st-v2.r2.pgf
d) Chip Layout File: HuEx-1_0-st-v2.r2.clf
ii) Mouse:
a) Transcript Annotation: MoEx-1_0-st-v1.na24.mm8.transcript.csv
b) Probeset Annotation: MoEx-1_0-st-v1.na24.mm8.probeset.csv
c) Probe Group File: MoEx-1_0-st-v1.r2.pgf
d) Chip Layout File: MoEx-1_0-st-v1.r2.clf
3) Gene Info
i) Human
Gene_Info_Human.xls
ii) Mouse
Gene_Info_Mouse.xls
4) Probeset annotation:
i) Human
hg18Probeset
ii) Mouse
mm8Probeset